PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037818
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 338aa    MW: 37092.7 Da    PI: 6.5154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037818genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-174491148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l ++++  G g+W++ ar+ g++Rt+k+c++rw++yl
      Lus10037818 44 RGPWTVEEDFKLMNYIATNGEGRWNSLARCAGLKRTGKSCRLRWLNYL 91
                     89********************************************97 PP

2Myb_DNA-binding50.16.2e-1697140146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
      Lus10037818  97 RGNITLEEQLMILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9513991IPR017930Myb domain
SuperFamilySSF466895.62E-3041138IPR009057Homeodomain-like
SMARTSM007178.4E-144393IPR001005SANT/Myb domain
PfamPF002492.4E-154491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-224598IPR009057Homeodomain-like
CDDcd001676.57E-114691No hitNo description
PROSITE profilePS5129422.36192146IPR017930Myb domain
SMARTSM007174.1E-1496144IPR001005SANT/Myb domain
PfamPF002493.1E-1497140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2399145IPR009057Homeodomain-like
CDDcd001673.69E-11101140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDANYGSTAG GGIINNSQQR SSSSSSSSSG GGGGAEEEMS DLRRGPWTVE EDFKLMNYIA  60
TNGEGRWNSL ARCAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLMILD LHSRWGNRWS  120
KIAQHLPGRT DNEIKNYWRT RVQKHAKQLK CDVNSKQFKD TMRYLWMPRL IERIQASSNN  180
TTVPSTSAPA AAPAAVPVAD VYGHMAAGVP SGNSSVATSA DSFGTQVVSP MSDMTDYYNV  240
PTGGGVNFGS DPNPTGAGYD YGSLGLISPM GNYYNEQQGY NWDHYYSQGT ANNNDINNNS  300
NNHVQWLDGG DGATSEGLWI AEDIWFLQQQ FNSNNNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24391442106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010946.11e-117PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE13e-90MY108_ARATH; Transcription factor MYB108
TrEMBLB9HIK11e-116B9HIK1_POPTR; GmMYB12 family protein
STRINGPOPTR_0008s10080.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.18e-90myb domain protein 108